Pinnacle Export Tool

Export DICOM objects from raw Pinnacle data.


usage: pymedphys pinnacle [-h] {export} ...

Positional Arguments

pinnacle Possible choices: export



Export a raw file to DICOM

pymedphys pinnacle export [-h] [-o OUTPUT_DIRECTORY] [-v] [-l] [-m MODALITY]
                          [-p PLAN] [-t TRIAL] [-i IMAGE] [-u UID_PREFIX]
Positional Arguments
input_path Root Patient directory of raw Pinnacle data (directory containing the ‘Patient’ file). Alternatively a TAR archive can be supplied.
Named Arguments
-o, --output-directory
 Directory in which to generate DICOM objects.
-v, --verbose

Flag to output debug information.

Default: False

-l, --list

List all plans and trials available.

Default: False

-m, --modality

Modalities to export (CT exports the plans primary planning CT).

Default: []

-p, --plan The name of the plan to export (first plan will be exported by default).
-t, --trial The name of the trial to export (first trial will be exported by default).
-i, --image The UID of an image series you would like to export (or ‘all’ to export all images).
-u, --uid-prefix
 Prefix to use for generated UIDs.